Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | shim_13290 | P29912 | Negative | 1315047 - 1315454 | 14864.0 |
| nadh-quinone oxidoreductase subunit i | shim_13300 | A8LIV0 | Negative | 1315451 - 1315945 | 18962.6 |
| nadh-quinone oxidoreductase subunit h | shim_13310 | Q163R6 | Negative | 1315947 - 1316984 | 38224.0 |
| hypothetical protein | shim_13320 | Not Available | Negative | 1316991 - 1317401 | 14784.5 |
| nadh-quinone oxidoreductase chain 3 | shim_13330 | P29915 | Negative | 1317408 - 1319420 | 71820.3 |
| hypothetical protein | shim_13340 | Not Available | Negative | 1319424 - 1319825 | 14888.6 |
| hypothetical protein | shim_13350 | Not Available | Negative | 1319929 - 1320267 | 12545.0 |
| hypothetical protein | shim_13360 | Not Available | Negative | 1320264 - 1320761 | 18856.1 |
| hypothetical protein | shim_13370 | Not Available | Negative | 1320754 - 1321029 | 9663.14 |
| nadh-quinone oxidoreductase chain 1 | shim_13380 | P29913 | Negative | 1321040 - 1322335 | 47184.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
