Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_13190 | Not Available | Positive | 1302822 - 1303775 | 36130.9 |
| atp-dependent rna helicase rhle | shim_13200 | Not Available | Positive | 1303948 - 1305372 | 52665.0 |
| ribonuclease j 1 | shim_13210 | M4MR97 | Negative | 1305449 - 1307113 | 60311.2 |
| type iii pantothenate kinase | shim_13220 | Q28T47 | Negative | 1307110 - 1307886 | 27793.1 |
| bifunctional ligase/repressor bira | shim_13230 | P29906 | Negative | 1307911 - 1308663 | 26478.4 |
| nadh-quinone oxidoreductase subunit n | shim_13240 | Q28T49 | Negative | 1308871 - 1310310 | 51159.1 |
| nadh-quinone oxidoreductase subunit m | shim_13250 | P50974 | Negative | 1310325 - 1311872 | 56251.4 |
| nadh-quinone oxidoreductase subunit l | shim_13260 | P29924 | Negative | 1311872 - 1314025 | 78622.6 |
| nadh-quinone oxidoreductase subunit k | shim_13270 | Q5LPT3 | Negative | 1314030 - 1314335 | 10842.8 |
| nadh-quinone oxidoreductase subunit j | shim_13280 | P29922 | Negative | 1314442 - 1315050 | 22035.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
