Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglycosylase associated protein | shim_12990 | Not Available | Positive | 1284330 - 1284605 | 8909.46 |
| amidophosphoribosyltransferase | shim_13000 | Q9L6B8 | Positive | 1284996 - 1286525 | 55710.3 |
| hypothetical protein | shim_13010 | Not Available | Positive | 1286538 - 1287101 | 20842.3 |
| hypothetical protein | shim_13020 | Not Available | Positive | 1287226 - 1287483 | 9130.22 |
| putative oxidoreductase | shim_13030 | A0A1U8QWA2 | Positive | 1287543 - 1288202 | 23345.8 |
| 5'-nucleotidase sure | shim_13040 | Q5LQ08 | Positive | 1288331 - 1289113 | 27213.3 |
| protein-l-isoaspartate o-methyltransferase | shim_13050 | A1B5M0 | Positive | 1289110 - 1289766 | 23757.6 |
| murein hydrolase activator nlpd precursor | shim_13060 | Not Available | Positive | 1289903 - 1291081 | 40734.3 |
| hypothetical protein | shim_13070 | Not Available | Negative | 1291083 - 1291928 | 31378.2 |
| sec-independent protein translocase protein tatc | shim_13080 | D5AT98 | Negative | 1292052 - 1293011 | 35101.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
