Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine racemase, biosynthetic | shim_12890 | Q163V1 | Positive | 1276531 - 1277568 | 36953.3 |
| putative phospholipid abc transporter permease protein mlae | shim_12900 | Q1RGU3 | Positive | 1277565 - 1278350 | 27376.1 |
| glutamine transport atp-binding protein glnq | shim_12910 | P30769 | Positive | 1278347 - 1279093 | 26580.5 |
| hypothetical protein | shim_12920 | Not Available | Positive | 1279093 - 1279425 | 12749.1 |
| hypothetical protein | shim_12930 | Not Available | Positive | 1279541 - 1279906 | 13526.1 |
| hypothetical protein | shim_12940 | Not Available | Positive | 1279932 - 1280321 | 13955.7 |
| paraquat-inducible protein a | shim_12950 | Not Available | Positive | 1280499 - 1280933 | 15805.4 |
| hypothetical protein | shim_12960 | Q2YMH5 | Positive | 1280951 - 1282318 | 47554.1 |
| colicin v production protein | shim_12970 | Not Available | Positive | 1282348 - 1282902 | 19676.1 |
| hypothetical protein | shim_12980 | Not Available | Positive | 1283032 - 1284306 | 47002.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
