Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_00970 | Not Available | Positive | 88798 - 89859 | 37735.3 |
| amino-acid carrier protein alst | shim_00980 | P30143 | Positive | 90045 - 91469 | 49677.8 |
| adenylate and guanylate cyclase catalytic domain protein | shim_00990 | Not Available | Negative | 91491 - 92447 | 34344.4 |
| phenylalanine--trna ligase alpha subunit | shim_01000 | Q5LMG9 | Positive | 92604 - 93674 | 39408.0 |
| gmp synthase (glutamine-hydrolyzing) | shim_01010 | Not Available | Positive | 93788 - 94567 | 26763.9 |
| hypothetical protein | shim_01020 | Not Available | Negative | 94691 - 95821 | 42044.7 |
| phenylalanine--trna ligase beta subunit | shim_01030 | Q5LMS3 | Positive | 95992 - 98391 | 85230.1 |
| putative acetyltransferase | shim_01040 | Not Available | Positive | 98395 - 98820 | 14828.0 |
| hth-type transcriptional regulator tfds | shim_01050 | P96194 | Negative | 98817 - 99695 | 32154.7 |
| putative methyltransferase ycgj | shim_01060 | Not Available | Positive | 99781 - 100413 | 22605.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
