Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbon monoxide dehydrogenase large chain | shim_12790 | Not Available | Negative | 1264418 - 1266781 | 83983.2 |
| carbon monoxide dehydrogenase small chain | shim_12800 | P19921 | Negative | 1266893 - 1267378 | 16847.0 |
| hypothetical protein | shim_12810 | Not Available | Negative | 1267523 - 1268509 | 33822.8 |
| putative xanthine dehydrogenase subunit a | shim_12820 | P77183 | Negative | 1268506 - 1269480 | 33902.6 |
| vwa domain containing coxe-like protein | shim_12830 | Not Available | Negative | 1269536 - 1270795 | 47016.8 |
| aaa domain (dynein-related subfamily) | shim_12840 | Not Available | Negative | 1270853 - 1271761 | 33345.2 |
| hypothetical protein | shim_12850 | Not Available | Positive | 1271950 - 1272894 | 35207.5 |
| dihydroorotase | shim_12860 | Q1GFQ7 | Positive | 1272965 - 1274008 | 37398.5 |
| orotate phosphoribosyltransferase | shim_12870 | Q1GFQ6 | Positive | 1274042 - 1274722 | 24833.8 |
| replicative dna helicase | shim_12880 | Q92HG8 | Positive | 1274962 - 1276455 | 54511.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
