Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multiple antibiotic resistance protein marr | shim_12690 | P0A2T5 | Negative | 1257721 - 1258203 | 17351.0 |
| hypothetical protein | shim_12700 | Not Available | Positive | 1258309 - 1258710 | 13762.4 |
| hypothetical protein | shim_12710 | Not Available | Negative | 1258813 - 1259475 | 22382.5 |
| translation initiation factor if-3 | shim_12720 | Q5LQ58 | Positive | 1259760 - 1260221 | 17511.6 |
| isoprenylcysteine carboxyl methyltransferase (icmt) family protein | shim_12730 | Not Available | Positive | 1260298 - 1261005 | 26031.5 |
| tellurite resistance protein tehb | shim_12740 | Not Available | Positive | 1261016 - 1261615 | 22100.2 |
| hypothetical protein | shim_12750 | Not Available | Positive | 1261622 - 1262323 | 25870.8 |
| hypothetical protein | shim_12760 | Not Available | Positive | 1262634 - 1262846 | 7644.44 |
| hypothetical protein | shim_12770 | Not Available | Positive | 1262944 - 1263474 | 19207.6 |
| carbon monoxide dehydrogenase medium chain | shim_12780 | P19920 | Negative | 1263619 - 1264404 | 26382.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
