Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_12490 | P70949 | Positive | 1237987 - 1238355 | 13157.7 |
| putative glycerophosphoryl diester phosphodiesterase 1 | shim_12500 | D4AIS9 | Positive | 1238457 - 1239665 | 43944.9 |
| iron-binding protein isca | shim_12510 | P44672 | Positive | 1239785 - 1240180 | 14222.0 |
| 2-oxoglutarate-dependent ethylene/succinate-forming enzyme | shim_12520 | A0A2U8U2L3 | Negative | 1240183 - 1241094 | 33043.9 |
| triosephosphate isomerase | shim_12530 | A8LPW1 | Positive | 1241215 - 1241964 | 25762.4 |
| sialic acid trap transporter permease protein siat | shim_12540 | Q9KQS1 | Negative | 1242123 - 1243502 | 48177.5 |
| 2,3-diketo-l-gulonate trap transporter small permease protein yiam | shim_12550 | Q9KQS0 | Negative | 1243502 - 1244167 | 24877.2 |
| c4-dicarboxylate-binding periplasmic protein precursor | shim_12560 | Q9KQR9 | Negative | 1244258 - 1245262 | 36462.2 |
| fatty acid desaturase | shim_12570 | Q5AJX2 | Positive | 1245621 - 1246712 | 40511.7 |
| inner membrane protein ybjj | shim_12580 | P55682 | Negative | 1246757 - 1247920 | 40115.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
