Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_12290 | Q8YDP7 | Positive | 1218873 - 1220105 | 43234.4 |
| transcriptional regulator hosa | shim_12300 | P0DPR8 | Negative | 1220102 - 1220539 | 16257.8 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | shim_12310 | Not Available | Positive | 1220647 - 1221036 | 14132.7 |
| 2-aminomuconic 6-semialdehyde dehydrogenase | shim_12320 | P42269 | Positive | 1221033 - 1222544 | 54394.8 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | shim_12330 | Q05353 | Positive | 1222544 - 1223398 | 31377.1 |
| manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase | shim_12340 | P31003 | Positive | 1223408 - 1224391 | 37474.2 |
| glutarate-semialdehyde dehydrogenase davd | shim_12350 | Not Available | Positive | 1224388 - 1225851 | 50774.4 |
| l-2,4-diaminobutyrate decarboxylase | shim_12360 | P80041 | Positive | 1225855 - 1227252 | 51219.8 |
| ureidoglycolate lyase | shim_12370 | O06724 | Positive | 1227249 - 1228103 | 31176.7 |
| 2-keto-4-pentenoate hydratase | shim_12380 | P42270 | Positive | 1228100 - 1228900 | 28641.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
