Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_12090 | Not Available | Negative | 1197641 - 1198372 | 26807.0 |
| nucleoside triphosphate pyrophosphohydrolase | shim_12100 | Not Available | Negative | 1198426 - 1198863 | 16450.6 |
| n-acetylmuramoyl-l-alanine amidase amic precursor | shim_12110 | P63884 | Negative | 1198899 - 1200119 | 43694.2 |
| response regulator pled | shim_12120 | Not Available | Positive | 1200296 - 1202116 | 66500.7 |
| aspartate aminotransferase | shim_12130 | P96847 | Negative | 1202113 - 1203261 | 41460.6 |
| tpr repeat-containing protein yfgc precursor | shim_12140 | Not Available | Positive | 1203318 - 1204649 | 48793.8 |
| protein disulfide isomerase ii dsbc | shim_12150 | Not Available | Positive | 1204663 - 1205409 | 26872.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | shim_12160 | Q1GIC1 | Negative | 1205620 - 1206750 | 39957.1 |
| hypothetical protein | shim_12170 | Not Available | Negative | 1206823 - 1208052 | 44035.2 |
| 5-aminolevulinate synthase | shim_12180 | P43089 | Negative | 1208125 - 1209360 | 44677.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
