Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase isozyme 3 small subunit | shim_11990 | O28555 | Positive | 1187364 - 1187927 | 19957.9 |
| hypothetical protein | shim_12000 | Not Available | Negative | 1188004 - 1188381 | 13924.4 |
| helix-turn-helix domain protein | shim_12010 | Not Available | Positive | 1188604 - 1189422 | 30851.9 |
| anthranilate 1,2-dioxygenase large subunit | shim_12020 | O85673 | Positive | 1189528 - 1190691 | 43041.5 |
| hypothetical protein | shim_12030 | Not Available | Positive | 1190688 - 1190900 | 7713.06 |
| hypothetical protein | shim_12040 | Not Available | Negative | 1190897 - 1191709 | 29427.7 |
| acylamidase | shim_12050 | O28325 | Negative | 1191851 - 1193266 | 50952.0 |
| peptide chain release factor 2 | shim_12060 | Q1GIB5 | Negative | 1193359 - 1194483 | 41332.3 |
| hypothetical protein | shim_12070 | Not Available | Negative | 1194650 - 1194916 | 9100.92 |
| penicillin-binding protein 1a | shim_12080 | Q1RKC5 | Negative | 1194990 - 1197488 | 92084.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
