Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_11790 | Not Available | Positive | 1166591 - 1166758 | 5984.0 |
| hypothetical protein | shim_11800 | Not Available | Positive | 1166762 - 1167946 | 45469.8 |
| hypothetical protein | shim_11810 | Not Available | Negative | 1167943 - 1168404 | 16117.3 |
| metalloprotease loip precursor | shim_11820 | Not Available | Positive | 1168579 - 1169271 | 25085.7 |
| hypothetical protein | shim_11830 | Not Available | Negative | 1169268 - 1169822 | 20282.6 |
| ribosomal rna large subunit methyltransferase i | shim_11840 | Not Available | Negative | 1169819 - 1171018 | 42250.8 |
| hypothetical protein | shim_11850 | Not Available | Negative | 1171061 - 1171717 | 23273.2 |
| hypothetical protein | shim_11860 | Not Available | Negative | 1171853 - 1172122 | 10158.1 |
| glutamate-ammonia-ligase adenylyltransferase | shim_11870 | Q985F6 | Negative | 1172124 - 1174934 | 101079.0 |
| hypothetical protein | shim_11880 | Not Available | Negative | 1174997 - 1175365 | 13352.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
