Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-aminobenzoyl-glutamate transport protein | shim_11490 | P46133 | Positive | 1140019 - 1141713 | 59842.3 |
| carnitine operon protein caie | shim_11500 | Not Available | Negative | 1141736 - 1142284 | 19095.1 |
| abc transporter atp-binding protein uup | shim_11510 | Q45978 | Negative | 1142402 - 1144210 | 66980.3 |
| hypothetical protein | shim_11520 | Q9HW51 | Negative | 1144295 - 1145032 | 27778.9 |
| smpa / omla family protein | shim_11530 | Not Available | Negative | 1145121 - 1145579 | 16413.5 |
| hypothetical protein | shim_11540 | Not Available | Positive | 1145659 - 1146216 | 20441.2 |
| 50s ribosomal protein l32 | shim_11550 | Q1GI67 | Positive | 1146356 - 1146562 | 7515.67 |
| phosphate acyltransferase | shim_11560 | Q1GI68 | Positive | 1146584 - 1147687 | 38540.0 |
| 3-oxoacyl-(acyl-carrier-protein) synthase 3 | shim_11570 | Q1GI69 | Positive | 1147708 - 1148682 | 34081.8 |
| integration host factor subunit alpha | shim_11580 | Q5LQJ4 | Positive | 1148824 - 1149126 | 11155.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
