Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_11390 | Not Available | Negative | 1131292 - 1131864 | 21393.9 |
| thiol:disulfide interchange protein dsbd | shim_11400 | Q9KDL8 | Negative | 1131878 - 1132618 | 26506.2 |
| hypothetical protein | shim_11410 | Not Available | Positive | 1132795 - 1133079 | 10641.5 |
| biofilm growth-associated repressor | shim_11420 | Not Available | Positive | 1133083 - 1133460 | 14103.9 |
| putative inner membrane protein | shim_11430 | Not Available | Positive | 1133502 - 1134557 | 36434.2 |
| Trna-leu | Not Available | Not Available | Positive | 1134607 - 1134691 | Not Available |
| hypothetical protein | shim_11450 | Not Available | Negative | 1134777 - 1135835 | 37852.5 |
| bifunctional nad(p)h-hydrate repair enzyme nnr | shim_11460 | B5YIM0 | Negative | 1135910 - 1137574 | 58662.7 |
| nitrogen regulatory protein p-ii | shim_11470 | P13556 | Positive | 1137750 - 1138088 | 12185.8 |
| glutamine synthetase 1 | shim_11480 | P43518 | Positive | 1138138 - 1139544 | 52379.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
