Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_11290 | Not Available | Negative | 1122363 - 1122794 | 15218.0 |
| sulfide dehydrogenase (flavocytochrome c) flavoprotein chain precursor | shim_11300 | Q06530 | Negative | 1122877 - 1124133 | 43777.0 |
| cytochrome c2 | shim_11310 | P00053 | Negative | 1124163 - 1124876 | 25453.3 |
| cytochrome c2 | shim_11320 | D5QVH0 | Negative | 1124878 - 1125912 | 37262.0 |
| sulfoxide reductase catalytic subunit yedy precursor | shim_11330 | Q07116 | Negative | 1125896 - 1127173 | 47010.1 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | shim_11340 | P21588 | Negative | 1127194 - 1128891 | 62061.6 |
| soxax cytochrome complex subunit a precursor | shim_11350 | Q939U1 | Negative | 1128971 - 1129825 | 31304.6 |
| sulfur oxidation protein soxz | shim_11360 | Not Available | Negative | 1129852 - 1130181 | 12011.1 |
| sulfur oxidation protein soxy | shim_11370 | Not Available | Negative | 1130218 - 1130640 | 14027.0 |
| cytochrome c | shim_11380 | Not Available | Negative | 1130665 - 1131138 | 16635.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
