Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_11190 | Not Available | Negative | 1114511 - 1115005 | 17988.1 |
| 30s ribosomal protein s6 | shim_11200 | A8LQQ5 | Positive | 1115290 - 1115646 | 13736.3 |
| 30s ribosomal protein s18 | shim_11210 | Q5LR49 | Positive | 1115672 - 1115899 | 8650.81 |
| 50s ribosomal protein l9 | shim_11220 | Q5LR48 | Positive | 1115913 - 1116539 | 22148.8 |
| transglycosylase slt domain protein | shim_11230 | Not Available | Positive | 1116656 - 1117120 | 16870.5 |
| hypothetical protein | shim_11240 | Not Available | Negative | 1117137 - 1117553 | 15447.5 |
| trigger factor | shim_11250 | Q5LR43 | Negative | 1117706 - 1119040 | 49268.0 |
| hydroxyacylglutathione hydrolase | shim_11260 | Not Available | Positive | 1119348 - 1120265 | 33001.7 |
| beta-lactamase precursor | shim_11270 | Not Available | Positive | 1120262 - 1121221 | 35165.6 |
| putative inner membrane protein | shim_11280 | P33015 | Positive | 1121245 - 1122285 | 36066.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
