Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septum formation initiator | shim_10880 | Not Available | Positive | 1089399 - 1089701 | 11103.6 |
| acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha | shim_10890 | Q9R9N5 | Positive | 1089816 - 1090805 | 36251.0 |
| 2-oxoisovalerate dehydrogenase subunit beta | shim_10900 | Q9R9N4 | Positive | 1090824 - 1092200 | 48580.9 |
| hypothetical protein | shim_10910 | Not Available | Positive | 1092232 - 1092489 | 9612.52 |
| dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | shim_10920 | Q9R9N3 | Positive | 1092495 - 1093808 | 45239.1 |
| serine acetyltransferase | shim_10930 | P29847 | Negative | 1093874 - 1094689 | 29321.4 |
| hypothetical protein | shim_11150 | Not Available | Negative | 1111787 - 1112032 | 9177.98 |
| acyl carrier protein | shim_11160 | Q1GHT1 | Negative | 1112182 - 1112415 | 8362.7 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_11170 | P72332 | Negative | 1112642 - 1113379 | 25294.7 |
| malonyl coa-acyl carrier protein transacylase | shim_11180 | P71019 | Negative | 1113397 - 1114338 | 31760.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
