Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aquaporin z | shim_10780 | Q2YR68 | Positive | 1079086 - 1079775 | 22914.2 |
| hypothetical protein | shim_10790 | Not Available | Positive | 1079924 - 1081126 | 44013.3 |
| inner membrane protein yiav precursor | shim_10800 | Not Available | Negative | 1081123 - 1082349 | 43865.1 |
| hypothetical protein | shim_10810 | Not Available | Negative | 1082342 - 1082719 | 13394.5 |
| hypothetical protein | shim_10820 | Not Available | Negative | 1082804 - 1083790 | 36524.6 |
| peptidyl-prolyl cis-trans isomerase cyp18 | shim_10830 | Not Available | Negative | 1083929 - 1084480 | 19708.4 |
| peptidyl-prolyl cis-trans isomerase b | shim_10840 | Q8YHB5 | Negative | 1084467 - 1084979 | 18398.8 |
| phosphoglycerate kinase | shim_10850 | Q1GHP9 | Positive | 1085106 - 1086296 | 40384.4 |
| fructose-bisphosphate aldolase class 1 | shim_10860 | B2RLG9 | Positive | 1086457 - 1087350 | 31542.8 |
| putative acyl-coa dehydrogenase aidb | shim_10870 | P33224 | Negative | 1087606 - 1089228 | 58510.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
