Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_10680 | Not Available | Positive | 1067822 - 1068247 | 15476.8 |
| hypothetical protein | shim_10690 | Not Available | Negative | 1068250 - 1068828 | 21947.0 |
| hypothetical protein | shim_10700 | Not Available | Negative | 1068999 - 1069712 | 27237.0 |
| putative mfs-type transporter ycad | shim_10710 | Not Available | Negative | 1069780 - 1071051 | 44892.4 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | shim_10720 | Q1GHP0 | Negative | 1071168 - 1072214 | 37439.1 |
| hypothetical protein | shim_10730 | Not Available | Negative | 1072220 - 1075600 | 118724.0 |
| putative peroxiredoxin bcp | shim_10740 | Q83CY8 | Positive | 1075612 - 1076073 | 16686.9 |
| hypothetical protein | shim_10750 | P43935 | Positive | 1076107 - 1076916 | 30109.6 |
| murein dd-endopeptidase mepm | shim_10760 | P0AFT0 | Positive | 1077094 - 1078407 | 48704.3 |
| polymer-forming cytoskeletal | shim_10770 | Not Available | Positive | 1078397 - 1078921 | 17764.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
