Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_10580 | Not Available | Positive | 1058243 - 1058569 | 12769.0 |
| hypothetical protein | shim_10590 | Not Available | Positive | 1058634 - 1058828 | 6886.93 |
| helix-turn-helix domain protein | shim_10600 | Not Available | Negative | 1058829 - 1059593 | 27738.6 |
| hypothetical protein | shim_10610 | Not Available | Positive | 1059716 - 1060147 | 15128.8 |
| hypothetical protein | shim_10620 | Not Available | Positive | 1060361 - 1061920 | 55103.7 |
| uvrabc system protein a | shim_10630 | Q98M36 | Negative | 1061940 - 1064798 | 105782.0 |
| hypothetical protein | shim_10640 | Not Available | Positive | 1064975 - 1065157 | 6034.24 |
| hypothetical protein | shim_10650 | Not Available | Negative | 1065330 - 1065902 | 21841.1 |
| hypothetical protein | shim_10660 | Not Available | Negative | 1065932 - 1066264 | 12191.7 |
| dihydrolipoyl dehydrogenase | shim_10670 | O05940 | Negative | 1066273 - 1067667 | 49234.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
