Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_10480 | Not Available | Positive | 1048100 - 1048705 | 22266.7 |
| phosphopantetheine adenylyltransferase | shim_10490 | Q5LRC9 | Negative | 1048818 - 1049315 | 18154.3 |
| inosine 5'-monophosphate dehydrogenase | shim_10500 | Q9LEV3 | Negative | 1049432 - 1049866 | 15391.9 |
| hth-type transcriptional regulator gltr | shim_10510 | Not Available | Negative | 1049931 - 1050839 | 33541.2 |
| methylmalonate-semialdehyde dehydrogenase (acylating) | shim_10520 | Q9I702 | Positive | 1050942 - 1052441 | 53805.4 |
| hypothetical protein | shim_10530 | Not Available | Positive | 1052522 - 1052932 | 15115.0 |
| phytochrome-like protein cph2 | shim_10540 | Not Available | Positive | 1053066 - 1054919 | 68293.8 |
| acyl-coa dehydrogenase | shim_10550 | Q54IM8 | Positive | 1055095 - 1056234 | 40975.8 |
| putative enoyl-coa hydratase echa8 | shim_10560 | Q6NMB0 | Positive | 1056321 - 1057361 | 37733.0 |
| 3-hydroxyisobutyrate dehydrogenase | shim_10570 | P63936 | Positive | 1057366 - 1058238 | 29330.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
