Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna dimethylallyltransferase | shim_10180 | Q1GGR8 | Positive | 1015524 - 1016402 | 32034.2 |
| hth-type transcriptional activator rhar | shim_10190 | Not Available | Positive | 1016501 - 1017472 | 35410.1 |
| dipeptide transport system permease protein dppb | shim_10200 | Q53191 | Positive | 1017703 - 1018788 | 39545.1 |
| glutathione transport system permease protein gsid | shim_10210 | Not Available | Positive | 1018804 - 1020255 | 52717.8 |
| glutathione import atp-binding protein gsia | shim_10220 | Q5PGP3 | Positive | 1020409 - 1022496 | 76371.6 |
| succinyl-diaminopimelate desuccinylase | shim_10230 | Q55FR8 | Negative | 1022585 - 1024054 | 52325.5 |
| methylamine utilization protein maug precursor | shim_10240 | Q51658 | Negative | 1024133 - 1025269 | 42095.3 |
| soluble lytic murein transglycosylase precursor | shim_10250 | O31608 | Negative | 1025376 - 1025996 | 22477.2 |
| single-stranded dna-binding protein | shim_10260 | Q9ZAQ8 | Positive | 1026313 - 1026840 | 18299.1 |
| peptidase t | shim_10270 | A4INW9 | Positive | 1027019 - 1028263 | 44386.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
