Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-(acyl-carrier-protein)--udp-n- acetylglucosamine o-acyltransferase | shim_10070 | A1B8X9 | Negative | 1005092 - 1005889 | 27710.4 |
| 3-hydroxyacyl-(acyl-carrier-protein) dehydratase fabz | shim_10080 | Q1GGS8 | Negative | 1005895 - 1006359 | 16975.9 |
| outer membrane protein (omph-like) | shim_10090 | Not Available | Negative | 1006484 - 1007038 | 20463.7 |
| outer membrane protein assembly factor bama precursor | shim_10100 | C6V5K2 | Negative | 1007045 - 1009408 | 87970.6 |
| hypothetical protein | shim_10110 | Not Available | Negative | 1009608 - 1009745 | 4925.1 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | shim_10130 | Q5LSU9 | Negative | 1011187 - 1012359 | 41774.9 |
| phosphatidate cytidylyltransferase | shim_10140 | Q8YHH2 | Negative | 1012356 - 1013126 | 26734.6 |
| ditrans,polycis-undecaprenyl-diphosphate synthase ((2e,6e)-farnesyl-diphosphate specific) | shim_10150 | Q8UFL9 | Negative | 1013123 - 1013851 | 27525.7 |
| ribosome-recycling factor | shim_10160 | Q1GGS0 | Negative | 1013854 - 1014420 | 20802.7 |
| uridylate kinase | shim_10170 | Q5LSV4 | Negative | 1014672 - 1015406 | 26614.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
