Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09970 | Not Available | Positive | 994711 - 995163 | 15788.8 |
| hypothetical protein | shim_09980 | Not Available | Negative | 995393 - 995515 | 4193.35 |
| atp-dependent dna helicase recg | shim_09990 | Q8XD86 | Negative | 995624 - 997714 | 75921.0 |
| dna ligase | shim_10000 | Q5LST6 | Negative | 997711 - 999993 | 82375.6 |
| cell cycle response regulator ctra | shim_10010 | A6WZ81 | Negative | 1000056 - 1000769 | 26570.1 |
| hypothetical protein | shim_10020 | Not Available | Negative | 1000972 - 1001280 | 11492.8 |
| trna-specific 2-thiouridylase mnma | shim_10030 | Q1GGT2 | Positive | 1001403 - 1002548 | 41534.0 |
| hypothetical protein | shim_10040 | Not Available | Negative | 1002555 - 1003130 | 20185.2 |
| lipid-a-disaccharide synthase | shim_10050 | Q5LSU1 | Negative | 1003134 - 1004288 | 41176.5 |
| hypothetical protein | shim_10060 | Q9A716 | Negative | 1004288 - 1005088 | 27845.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
