Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s9 | shim_09870 | A3PK94 | Negative | 987073 - 987558 | 17569.3 |
| 50s ribosomal protein l13 | shim_09880 | Q166D0 | Negative | 987562 - 988023 | 17133.8 |
| tellurite resistance protein teha | shim_09890 | Q9FLV9 | Negative | 988200 - 989168 | 34669.2 |
| hypothetical protein | shim_09900 | Not Available | Negative | 989257 - 989901 | 23479.7 |
| thioesterase superfamily protein | shim_09910 | Not Available | Negative | 989898 - 990320 | 15110.4 |
| putative enoyl-coa hydratase echa8 | shim_09920 | A9JS71 | Positive | 990377 - 991165 | 28337.0 |
| methylenetetrahydrofolate--trna-(uracil-5-)- methyltransferase trmfo | shim_09930 | Q1GGU2 | Positive | 991394 - 992749 | 49112.5 |
| trans-aconitate 2-methyltransferase | shim_09940 | Not Available | Positive | 992787 - 993398 | 21640.8 |
| glutamate--trna ligase | shim_09950 | O68142 | Positive | 993395 - 994234 | 30785.3 |
| phosphoribosyl-amp cyclohydrolase | shim_09960 | Q5LST2 | Negative | 994280 - 994642 | 13634.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
