Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09770 | Not Available | Negative | 975360 - 975857 | 18230.8 |
| hypothetical protein | shim_09780 | Not Available | Negative | 975883 - 976305 | 15701.8 |
| hypothetical protein | shim_09790 | Not Available | Negative | 976375 - 976995 | 23388.3 |
| hypothetical protein | shim_09800 | Not Available | Positive | 977110 - 977715 | 23031.4 |
| hypothetical protein | shim_09810 | Not Available | Positive | 977905 - 978192 | 10696.7 |
| tyrosine recombinase xerc | shim_09820 | Not Available | Positive | 978345 - 978923 | 21338.8 |
| hypothetical protein | shim_09830 | Not Available | Negative | 979293 - 979904 | 22741.6 |
| hypothetical protein | shim_09840 | Not Available | Negative | 979901 - 980206 | 11897.1 |
| type i restriction enzyme ecoki subunit r | shim_09850 | Not Available | Negative | 980265 - 985085 | 179345.0 |
| phage integrase family protein | shim_09860 | Not Available | Negative | 985510 - 986904 | 54487.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
