Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein transport protein (ompp1/fadl/todx) | shim_09670 | Not Available | Positive | 966971 - 968038 | 37301.1 |
| hypothetical protein | shim_09680 | Not Available | Positive | 968205 - 969074 | 32485.4 |
| homoserine o-succinyltransferase | shim_09690 | Q1GGV4 | Positive | 969121 - 970077 | 36718.5 |
| dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system | shim_09700 | Not Available | Positive | 970169 - 971128 | 34043.9 |
| polyphosphate kinase 2 (ppk2) | shim_09710 | Q5LSN8 | Positive | 971171 - 972040 | 33476.5 |
| hth-type transcriptional regulator beti | shim_09720 | Not Available | Positive | 972033 - 972650 | 21999.1 |
| hypothetical protein | shim_09730 | Not Available | Positive | 972647 - 973189 | 19967.1 |
| hypothetical protein | shim_09740 | Not Available | Negative | 973059 - 973550 | 18558.6 |
| hypothetical protein | shim_09750 | Not Available | Negative | 973538 - 974383 | 29996.9 |
| doubled cxxch motif | shim_09760 | Not Available | Negative | 974380 - 975060 | 25035.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
