Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | 4BY |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1363681 bp
Thymine Count
1358158 bp
Guanine Count
897383 bp
Cytosine Count
947093 bp
Genome Length
4566318 bp
Protein-coding Genes
3816 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding protein | N180_04560 | Not Available | Negative | 3728017 - 3729615 | 59175.3 |
| collagen-binding protein | N180_04565 | Not Available | Negative | 3729632 - 3732607 | 110442.0 |
| amino acid dehydrogenase | N180_04570 | Not Available | Negative | 3732718 - 3733959 | 45896.9 |
| hydroxyproline-2-epimerase | N180_04575 | Not Available | Negative | 3733987 - 3734985 | 36278.5 |
| 2,5-dioxovalerate dehydrogenase | N180_04580 | Not Available | Negative | 3734982 - 3736562 | 56178.6 |
| dihydrodipicolinate synthase | N180_04585 | Not Available | Negative | 3736574 - 3737491 | 33717.0 |
| peptidase m1 | N180_04590 | Not Available | Negative | 3737615 - 3739306 | 64742.9 |
| xaa-pro aminopeptidase | N180_04595 | Not Available | Negative | 3739319 - 3740716 | 51847.9 |
| hypothetical protein | N180_04605 | Not Available | Positive | 3743779 - 3746841 | 114000.0 |
| hypothetical protein | N180_04610 | Not Available | Negative | 3746817 - 3748055 | 47855.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

