Pedobacter antarcticus 4BY

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter antarcticus 4BY is a bacterial species notable for its flagella, which indicates its motility capabilities. The presence of flagella allows this organism to navigate its environment, potentially aiding in its survival and adaptation in various habitats. This species is characterized by having a single replicon, which suggests a streamlined genetic organization that may contribute to its efficiency in cellular processes. The accession number for Pedobacter antarcticus 4BY is JNFF00000000.1, indicating its genetic sequence is available for further study and analysis. This availability supports research into its genetic makeup, which could provide insights into its metabolic pathways and ecological roles. Understanding the traits of Pedobacter antarcticus 4BY can shed light on its ecological significance, particularly in Antarctic environments. As a member of the Pedobacter genus, this bacterium may play a role in nutrient cycling and organic matter decomposition in cold ecosystems. Its motility, facilitated by flagella, could enhance its ability to colonize diverse microhabitats, thereby influencing microbial community dynamics. Thus, the study of this organism contributes to our understanding of microbial life in extreme environments and the adaptations that enable survival in such conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter antarcticus
Strain4BY

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter antarcticus 4BY contig035, whole genome shotgun

Gene Summary

Adenine Count

1363681 bp

Thymine Count

1358158 bp

Guanine Count

897383 bp

Cytosine Count

947093 bp

Genome Length

4566318 bp

Protein-coding Genes

3816 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxymethylglutaryl-coa lyaseN180_20225Not AvailableNegative3502937 - 350378831154.2
preprotein translocase subunit secdN180_20230Not AvailableNegative3503907 - 3506864107377.0
dihydrofolate reductaseN180_20235Not AvailableNegative3507062 - 350754717967.7
thymidylate synthaseN180_20240Not AvailableNegative3507544 - 350833830293.2
4-diphosphocytidyl-2c-methyl-d-erythritol kinaseN180_20245Not AvailablePositive3508525 - 350933129230.1
osmotically inducible protein osmcN180_20250Not AvailablePositive3509335 - 350975415510.7
o-succinylhomoserine sulfhydrylaseN180_20255Not AvailablePositive3509757 - 351092943231.5
peptidaseN180_21025Not AvailableNegative3511587 - 351320958940.0
hypothetical proteinN180_19545Not AvailableNegative3513269 - 351462150081.4
gmc family oxidoreductaseN180_19550Not AvailableNegative3514771 - 351646562930.1

Displaying genes 3001 – 3010 of 3890 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.