Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | 4BY |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1363681 bp
Thymine Count
1358158 bp
Guanine Count
897383 bp
Cytosine Count
947093 bp
Genome Length
4566318 bp
Protein-coding Genes
3816 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase | N180_20225 | Not Available | Negative | 3502937 - 3503788 | 31154.2 |
| preprotein translocase subunit secd | N180_20230 | Not Available | Negative | 3503907 - 3506864 | 107377.0 |
| dihydrofolate reductase | N180_20235 | Not Available | Negative | 3507062 - 3507547 | 17967.7 |
| thymidylate synthase | N180_20240 | Not Available | Negative | 3507544 - 3508338 | 30293.2 |
| 4-diphosphocytidyl-2c-methyl-d-erythritol kinase | N180_20245 | Not Available | Positive | 3508525 - 3509331 | 29230.1 |
| osmotically inducible protein osmc | N180_20250 | Not Available | Positive | 3509335 - 3509754 | 15510.7 |
| o-succinylhomoserine sulfhydrylase | N180_20255 | Not Available | Positive | 3509757 - 3510929 | 43231.5 |
| peptidase | N180_21025 | Not Available | Negative | 3511587 - 3513209 | 58940.0 |
| hypothetical protein | N180_19545 | Not Available | Negative | 3513269 - 3514621 | 50081.4 |
| gmc family oxidoreductase | N180_19550 | Not Available | Negative | 3514771 - 3516465 | 62930.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

