Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | 4BY |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1363681 bp
Thymine Count
1358158 bp
Guanine Count
897383 bp
Cytosine Count
947093 bp
Genome Length
4566318 bp
Protein-coding Genes
3816 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsule biosynthesis protein | N180_15475 | Not Available | Negative | 3438662 - 3441259 | 95588.6 |
| gdp-mannose 4,6-dehydratase | N180_15480 | Not Available | Negative | 3441282 - 3442418 | 42818.5 |
| dtdp-glucose 4,6-dehydratase | N180_15485 | Not Available | Negative | 3442577 - 3443638 | 40236.1 |
| glycerophosphodiester phosphodiesterase | N180_20360 | Not Available | Negative | 3443710 - 3444627 | 35165.9 |
| cysteinyl-trna synthetase | N180_20365 | Not Available | Negative | 3444759 - 3445613 | 31606.2 |
| cysteine--trna ligase | N180_20370 | Not Available | Negative | 3445644 - 3447104 | 55312.2 |
| transmembrane rhomboid family protein | N180_20380 | Not Available | Negative | 3448371 - 3449237 | 32482.0 |
| transmembrane rhomboid family protein | N180_20385 | Not Available | Negative | 3449230 - 3449967 | 27066.4 |
| dna mismatch repair protein mutl | N180_20390 | Not Available | Negative | 3449973 - 3451826 | 68865.4 |
| beta-n-acetylglucosaminidase | N180_20395 | Not Available | Positive | 3451961 - 3453781 | 67144.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

