Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | 4BY |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1363681 bp
Thymine Count
1358158 bp
Guanine Count
897383 bp
Cytosine Count
947093 bp
Genome Length
4566318 bp
Protein-coding Genes
3816 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic nucleotide-binding protein | N180_03890 | Not Available | Positive | 2791612 - 2792196 | 22503.4 |
| hypothetical protein | N180_03895 | Not Available | Positive | 2792273 - 2792803 | 19072.2 |
| short-chain dehydrogenase | N180_03900 | Not Available | Positive | 2792813 - 2793685 | 31790.7 |
| hypothetical protein | N180_03905 | Not Available | Negative | 2793734 - 2793979 | 8720.38 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | N180_03910 | Not Available | Negative | 2794046 - 2794525 | 17140.8 |
| 16s rrna methyltransferase | N180_03915 | Not Available | Negative | 2794570 - 2795280 | 26402.8 |
| hypothetical protein | N180_03920 | Not Available | Negative | 2795287 - 2796612 | 49447.8 |
| inorganic pyrophosphatase | N180_03925 | Not Available | Negative | 2796612 - 2797163 | 20727.7 |
| hypothetical protein | N180_03930 | Not Available | Negative | 2797170 - 2797829 | 25101.1 |
| nadh dehydrogenase | N180_03935 | Not Available | Negative | 2797875 - 2799248 | 50119.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

