Pedobacter antarcticus 4BY

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter antarcticus 4BY is a bacterial species notable for its flagella, which indicates its motility capabilities. The presence of flagella allows this organism to navigate its environment, potentially aiding in its survival and adaptation in various habitats. This species is characterized by having a single replicon, which suggests a streamlined genetic organization that may contribute to its efficiency in cellular processes. The accession number for Pedobacter antarcticus 4BY is JNFF00000000.1, indicating its genetic sequence is available for further study and analysis. This availability supports research into its genetic makeup, which could provide insights into its metabolic pathways and ecological roles. Understanding the traits of Pedobacter antarcticus 4BY can shed light on its ecological significance, particularly in Antarctic environments. As a member of the Pedobacter genus, this bacterium may play a role in nutrient cycling and organic matter decomposition in cold ecosystems. Its motility, facilitated by flagella, could enhance its ability to colonize diverse microhabitats, thereby influencing microbial community dynamics. Thus, the study of this organism contributes to our understanding of microbial life in extreme environments and the adaptations that enable survival in such conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter antarcticus
Strain4BY

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter antarcticus 4BY contig035, whole genome shotgun

Gene Summary

Adenine Count

1363681 bp

Thymine Count

1358158 bp

Guanine Count

897383 bp

Cytosine Count

947093 bp

Genome Length

4566318 bp

Protein-coding Genes

3816 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroxy-acid dehydrataseN180_09310Not AvailablePositive1610396 - 161209660064.4
acetohydroxyacid synthase small subunitN180_09320Not AvailablePositive1613869 - 161447123488.2
hypothetical proteinN180_09325Not AvailablePositive1614498 - 161497418225.0
ketol-acid reductoisomeraseN180_09330Not AvailablePositive1615009 - 161649054225.4
isopropylmalate isomeraseN180_09335Not AvailablePositive1616545 - 161796051073.1
3-isopropylmalate dehydrataseN180_09340Not AvailablePositive1617996 - 161858021775.6
molybdenum abc transporter atp-binding proteinN180_09345Not AvailablePositive1618580 - 162004954912.7
3-isopropylmalate dehydrogenaseN180_09350Not AvailablePositive1620128 - 162121939652.6
2-isopropylmalate synthaseN180_09355Not AvailablePositive1621228 - 162273654985.4
threonine dehydrataseN180_09360Not AvailablePositive1622756 - 162398845589.2

Displaying genes 1361 – 1370 of 3890 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.