Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium wenxiniae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence.
Gene Summary
Adenine Count
8144 bp
Thymine Count
8034 bp
Guanine Count
13530 bp
Cytosine Count
13968 bp
Genome Length
43676 bp
Protein-coding Genes
43 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
7
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ligase-associated dna damage response endonuclease pdem | ATN00_RS03885 | Not Available | Negative | 766546 - 767205 | 23904.7 |
| rhodanese-related sulfurtransferase | ATN00_RS03890 | Q9A9C8 | Positive | 767270 - 768127 | 30725.6 |
| cog3650 family protein | ATN00_RS03895 | Not Available | Negative | 768319 - 768840 | 18300.7 |
| dna-3-methyladenine glycosylase i | ATN00_RS03900 | P05100 | Negative | 768849 - 769412 | 21072.2 |
| dna topoisomerase (atp-hydrolyzing) subunit b | ATN00_RS03905 | P0CAX1 | Negative | 769417 - 771924 | 92049.2 |
| hypothetical protein | ATN00_RS03910 | Not Available | Positive | 772011 - 772502 | 17166.3 |
| plp-dependent aminotransferase family protein | ATN00_RS03915 | Not Available | Positive | 772674 - 774137 | 52301.2 |
| inorganic diphosphatase | ATN00_RS03920 | Q89WY0 | Negative | 774204 - 774743 | 20019.8 |
| m61 family metallopeptidase | ATN00_RS03925 | Not Available | Negative | 774779 - 776710 | 70972.1 |
| histidine--trna ligase | ATN00_RS03930 | Q2GBN6 | Positive | 776860 - 778122 | 46013.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

