Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

16340 bp

Thymine Count

15712 bp

Guanine Count

26702 bp

Cytosine Count

26420 bp

Genome Length

85174 bp

Protein-coding Genes

99 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinATN00_RS23535Not AvailableNegative403 - 88818017.4
tn3 family transposaseATN00_RS22185P08504Negative904 - 3855109152.0
recombinase family proteinATN00_RS22190P21703Positive3985 - 459022418.0
hypothetical proteinATN00_RS22195Not AvailablePositive4617 - 594548315.8
is5 family transposaseATN00_RS22200Not AvailableNegative5988 - 681830292.2
hypothetical proteinATN00_RS23540Not AvailableNegative6984 - 728911662.1
autotransporter outer membrane beta-barrel domain-containing proteinATN00_RS22205Not AvailablePositive7872 - 13529186379.0
hypothetical proteinATN00_RS22210Not AvailablePositive13956 - 1432113027.4
hypothetical proteinATN00_RS22215Not AvailablePositive14359 - 1475415138.9
tyrosine-type recombinase/integraseATN00_RS22220Not AvailablePositive14751 - 1571335277.6

Displaying genes 1 – 10 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm000830411a-hydroxytetracyclineC22H24N2O9Chemical structure of 11a-hydroxytetracyclineNot available
Average460.439Da
Monoisotopic460.148180361Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.