Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1208 bp

Thymine Count

1181 bp

Guanine Count

1647 bp

Cytosine Count

1782 bp

Genome Length

5818 bp

Protein-coding Genes

8 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinATN00_RS23535Not AvailableNegative403 - 88818017.4
tn3 family transposaseATN00_RS22185P08504Negative904 - 3855109152.0
recombinase family proteinATN00_RS22190P21703Positive3985 - 459022418.0
hypothetical proteinATN00_RS22195Not AvailablePositive4617 - 594548315.8
is5 family transposaseATN00_RS22200Not AvailableNegative5988 - 681830292.2
hypothetical proteinATN00_RS23540Not AvailableNegative6984 - 728911662.1
autotransporter outer membrane beta-barrel domain-containing proteinATN00_RS22205Not AvailablePositive7872 - 13529186379.0
hypothetical proteinATN00_RS22210Not AvailablePositive13956 - 1432113027.4
hypothetical proteinATN00_RS22215Not AvailablePositive14359 - 1475415138.9
tyrosine-type recombinase/integraseATN00_RS22220Not AvailablePositive14751 - 1571335277.6

Displaying genes 1 – 10 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

44 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00004323,5-dichlorocatecholC6H4Cl2O2Chemical structure of 3,5-dichlorocatecholNot available
Average179.001Da
Monoisotopic177.9588348Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm0000538D-arabinonateC5H9O6Chemical structure of D-arabinonateNot available
Average165.122Da
Monoisotopic165.04046159Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm00010412,6-dihydroxypyridineC5H5NO2Chemical structure of 2,6-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.032028405Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 44 metabolites

Health Effects

No health effects information available for this bacterium.