Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence.

Gene Summary

Adenine Count

8144 bp

Thymine Count

8034 bp

Guanine Count

13530 bp

Cytosine Count

13968 bp

Genome Length

43676 bp

Protein-coding Genes

43 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s9 family peptidaseATN00_RS10640Not AvailablePositive2149871 - 215077031134.2
duf6491 family proteinATN00_RS10645Not AvailablePositive2150871 - 215125113440.9
trna pseudouridine(55) synthase trubATN00_RS10650Q2G5F3Positive2151284 - 215217730884.6
30s ribosomal protein s15ATN00_RS10655Q5NQ31Positive2152195 - 215246410232.3
polyribonucleotide nucleotidyltransferaseATN00_RS10660Q1GVQ8Positive2152639 - 215494283044.5
hypothetical proteinATN00_RS23425Not AvailableNegative2155164 - 215590727056.5
sensor histidine kinaseATN00_RS10670Not AvailablePositive2156094 - 215712236836.2
outer membrane protein assembly factor bamdATN00_RS10675Q9A6U9Positive2157171 - 215794429334.0
dna repair protein recnATN00_RS10680Q87BS5Positive2157989 - 215965058465.3
nad-dependent dna ligase ligaATN00_RS10685Q1GVQ2Positive2159700 - 216184177630.8

Displaying genes 2331 – 2340 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0004313(-)-trans-permethrinC21H20Cl2O3Chemical structure of (-)-trans-permethrinNot available
Average391.29Da
Monoisotopic390.0789499Da
BASm0004316(1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateC8H9Cl2O2Chemical structure of (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateNot available
Average208.06Da
Monoisotopic206.9985085Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.