Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence.

Gene Summary

Adenine Count

8144 bp

Thymine Count

8034 bp

Guanine Count

13530 bp

Cytosine Count

13968 bp

Genome Length

43676 bp

Protein-coding Genes

43 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine o-acetyltransferase epscATN00_RS10590Q59967Positive2138573 - 213958336354.2
glycosyltransferase family 39 proteinATN00_RS10595Not AvailablePositive2139654 - 214124058556.1
hypothetical proteinATN00_RS10600Not AvailableNegative2141206 - 21413886288.73
acyl-coa dehydrogenaseATN00_RS10605Q5LLW7Positive2141559 - 214329261103.5
ribosome maturation protein rimpATN00_RS10610A5VCZ9Positive2143430 - 214395419025.5
transcription termination factor nusaATN00_RS10615Q92HF4Positive2143968 - 214553958047.0
4-oxalocrotonate tautomerase family proteinATN00_RS10620Not AvailablePositive2145546 - 21457978449.99
duf448 domain-containing proteinATN00_RS10625Not AvailablePositive2145891 - 214654722831.6
translation initiation factor if-2ATN00_RS10630Q1GVI9Positive2146617 - 214920292997.8
30s ribosome-binding factor rbfaATN00_RS10635Q1GVI8Positive2149306 - 214970114968.0

Displaying genes 2321 – 2330 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0004313(-)-trans-permethrinC21H20Cl2O3Chemical structure of (-)-trans-permethrinNot available
Average391.29Da
Monoisotopic390.0789499Da
BASm0004316(1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateC8H9Cl2O2Chemical structure of (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateNot available
Average208.06Da
Monoisotopic206.9985085Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.