Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence.

Gene Summary

Adenine Count

8144 bp

Thymine Count

8034 bp

Guanine Count

13530 bp

Cytosine Count

13968 bp

Genome Length

43676 bp

Protein-coding Genes

43 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gldg family proteinATN00_RS09425Not AvailablePositive1885708 - 188693444419.4
division/cell wall cluster transcriptional repressor mrazATN00_RS09430Not AvailablePositive1887122 - 188761918844.3
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhATN00_RS09435A5VDD4Positive1887616 - 188858135105.5
hypothetical proteinATN00_RS09440Not AvailablePositive1888578 - 188922823768.6
penicillin-binding protein 2ATN00_RS09445B8H0A0Positive1889228 - 189094361798.9
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseATN00_RS09450Q9RNM2Positive1890940 - 189238550711.7
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseATN00_RS09455O33804Positive1892382 - 189377648110.6
phospho-n-acetylmuramoyl-pentapeptide- transferaseATN00_RS09460A5VDC9Positive1893776 - 189484938568.2
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseATN00_RS09465Q2G997Positive1894852 - 189616846010.9
putative lipid ii flippase ftswATN00_RS09470B8H092Positive1896197 - 189739943608.8

Displaying genes 2081 – 2090 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0004313(-)-trans-permethrinC21H20Cl2O3Chemical structure of (-)-trans-permethrinNot available
Average391.29Da
Monoisotopic390.0789499Da
BASm0004316(1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateC8H9Cl2O2Chemical structure of (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateNot available
Average208.06Da
Monoisotopic206.9985085Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.