Sphingobium wenxiniae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium wenxiniae is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This motility can be advantageous in various environments, allowing the organism to navigate toward favorable conditions or resources. Genomic analysis reveals that Sphingobium wenxiniae possesses a total of seven replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons is often associated with diverse functional capabilities, which can play a role in the organism's survival in various ecological niches. The strain is cataloged under several accession numbers: NZ_CP013268.1, NZ_CP013272.1, NZ_CP013267.1, NZ_CP013264.1, NZ_CP013266.1, NZ_CP013271.1, and NZ_CP013270.1. These accessions provide a pathway for researchers to access genomic resources for further study and understanding of the organism's biology. Overall, the combination of motility through flagella and the complexity of having seven replicons suggests that Sphingobium wenxiniae may occupy a specialized ecological niche, potentially involving interactions with its environment that could include biodegradation or nutrient cycling. Further research into its environmental roles could provide insights into its contributions to ecosystem functions and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium wenxiniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence.

Gene Summary

Adenine Count

8144 bp

Thymine Count

8034 bp

Guanine Count

13530 bp

Cytosine Count

13968 bp

Genome Length

43676 bp

Protein-coding Genes

43 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p-ii family nitrogen regulatorATN00_RS06105O54053Negative1231307 - 123164511958.5
duf924 family proteinATN00_RS06110Not AvailableNegative1231810 - 123238521610.4
metalloprotease tlddATN00_RS06115P0AGG9Negative1232440 - 123388250882.4
zinc-finger domain-containing proteinATN00_RS06120Not AvailableNegative1233983 - 12342107966.45
Trna-valNot AvailableNot AvailablePositive1234519 - 1234594Not Available
winged helix dna-binding proteinATN00_RS06135Not AvailableNegative1234769 - 123580337675.9
d-amino-acid transaminaseATN00_RS06140O29329Negative1236041 - 123689230272.6
rna polymerase factor sigma-54ATN00_RS06145P30333Negative1237015 - 123853554442.0
lps export abc transporter atp-binding proteinATN00_RS06150Not AvailableNegative1238587 - 123937228229.2
abc-f family atp-binding cassette domain-containing proteinATN00_RS06155P25256Negative1239479 - 124110457854.2

Displaying genes 1411 – 1420 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0004313(-)-trans-permethrinC21H20Cl2O3Chemical structure of (-)-trans-permethrinNot available
Average391.29Da
Monoisotopic390.0789499Da
BASm0004316(1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateC8H9Cl2O2Chemical structure of (1S,3R)-3-(2,2-dichlorovinyl)-2,2-dimethylcyclopropanecarboxylateNot available
Average208.06Da
Monoisotopic206.9985085Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.