Sphingobium sp. TKS

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. TKS is a flagellated bacterium characterized by its possession of true flagella, which likely aids in its motility and environmental adaptability. The organism is notable for having 11 replicons, suggesting a complex genomic structure that may contribute to its versatility in various ecological niches. The genomic data for Sphingobium sp. TKS is represented by multiple accession numbers, including NZ_CP005083.1, NZ_CP005085.1, NZ_CP005089.1, NZ_CP005084.1, NZ_CP005088.1, NZ_CP005090.1, NZ_CP005086.1, NZ_CP005087.1, NZ_CP005091.1, NZ_CP005092.1, and NZ_CP005093.1. These accession numbers indicate that the organism's genetic material has been sequenced and deposited in public databases, enabling further research into its biological characteristics and potential applications. The presence of flagella suggests that Sphingobium sp. TKS may be adapted to environments where mobility is advantageous, such as in diverse aquatic ecosystems or in soil environments where it can interact with various substrates. The complex structure indicated by the number of replicons may also facilitate metabolic flexibility, allowing this bacterium to thrive in conditions where specific nutrients or energy sources are limited. Thus, Sphingobium sp. TKS potentially plays a significant role in nutrient cycling and biodegradation processes, contributing to ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. TKS
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

776115 bp

Thymine Count

780087 bp

Guanine Count

1350762 bp

Cytosine Count

1342893 bp

Genome Length

4249857 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

11

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphate-dependent aminotransferaseK426_RS06765Not AvailableNegative1337257 - 133841441529.3
phosphoenolpyruvate--protein phosphotransferaseK426_RS06770Not AvailablePositive1338565 - 134084184615.5
helix-turn-helix domain-containing proteinK426_RS06775Not AvailablePositive1340956 - 134188531663.5
tetratricopeptide repeat proteinK426_RS06780Not AvailablePositive1341986 - 134287931359.3
trna lysidine(34) synthetase tilsK426_RS06785Not AvailablePositive1342887 - 134383133913.7
hypothetical proteinK426_RS06790Not AvailablePositive1343965 - 13441566789.5
atp-dependent zinc metalloprotease ftshK426_RS06795Not AvailablePositive1344232 - 134618170472.7
3-dehydroquinate synthaseK426_RS06800Not AvailableNegative1346353 - 134746239166.0
shikimate kinaseK426_RS06805Not AvailableNegative1347453 - 134800119900.2
hypothetical proteinK426_RS06810Not AvailablePositive1348083 - 13482747013.8

Displaying genes 1441 – 1450 of 6105 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

31 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm00027912-oxopropyl-coenzyme MC5H9O4S2Chemical structure of 2-oxopropyl-coenzyme MNot available
Average197.24Da
Monoisotopic196.994774698Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0003212N(6)-acetyl-N(6)-hydroxy-L-lysineC8H16N2O4Chemical structure of N(6)-acetyl-N(6)-hydroxy-L-lysineNot available
Average204.226Da
Monoisotopic204.111007003Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003475(R)-2-hydroxypropyl-coenzyme MC5H11O4S2Chemical structure of (R)-2-hydroxypropyl-coenzyme MNot available
Average199.26Da
Monoisotopic199.0104248Da
BASm00035853''-O-adenylylstreptomycinC31H53N12O18PChemical structure of 3''-O-adenylylstreptomycinNot available
Average912.804Da
Monoisotopic912.332742753Da

Displaying 1–10 of 31 metabolites

Health Effects

No health effects information available for this bacterium.