Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488036_10771 | Not Available | Positive | 1024552 - 1025181 | 21619.2 |
| hypothetical protein | SAMN04488036_10772 | Not Available | Negative | 1025191 - 1025418 | 8802.52 |
| adenine phosphoribosyltransferase | SAMN04488036_10773 | Not Available | Positive | 1025626 - 1026165 | 19582.9 |
| fad/fmn-containing dehydrogenase | SAMN04488036_10774 | Not Available | Negative | 1026244 - 1027647 | 49297.3 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN04488036_10775 | Not Available | Negative | 1027870 - 1028460 | 22432.9 |
| predicted zn-dependent peptidase | SAMN04488036_10776 | Not Available | Negative | 1028460 - 1029722 | 46109.7 |
| threonine synthase | SAMN04488036_10777 | Not Available | Negative | 1029719 - 1031107 | 50351.8 |
| surfeit locus 1 family protein | SAMN04488036_10778 | Not Available | Negative | 1031113 - 1031787 | 24696.8 |
| cytochrome c oxidase subunit 3 | SAMN04488036_10779 | Not Available | Negative | 1031900 - 1032700 | 29975.9 |
| cytochrome c oxidase assembly protein subunit 11 | SAMN04488036_10780 | Not Available | Negative | 1032730 - 1033305 | 21435.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
