Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr02453 family protein | SAMN04488036_10761 | Not Available | Positive | 1013704 - 1014348 | 24130.0 |
| polyphosphate kinase 2, pa0141 family | SAMN04488036_10762 | Not Available | Negative | 1014435 - 1015382 | 36398.3 |
| predicted dienelactone hydrolase | SAMN04488036_10763 | Not Available | Positive | 1015592 - 1016875 | 45598.5 |
| protein of unknown function | SAMN04488036_10764 | Not Available | Negative | 1016954 - 1017883 | 34590.7 |
| udp-apiose/xylose synthase | SAMN04488036_10765 | Not Available | Negative | 1017889 - 1018971 | 39268.6 |
| dna topoisomerase iv subunit b | SAMN04488036_10766 | Not Available | Positive | 1019301 - 1021256 | 71634.5 |
| hypothetical protein | SAMN04488036_10767 | Not Available | Positive | 1021341 - 1022159 | 29985.9 |
| hypothetical protein | SAMN04488036_10768 | Not Available | Positive | 1022351 - 1022770 | 15191.0 |
| hypothetical protein | SAMN04488036_10769 | Not Available | Positive | 1022819 - 1023493 | 25591.4 |
| methylthioadenosine phosphorylase | SAMN04488036_10770 | Not Available | Positive | 1023610 - 1024485 | 31348.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
