Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate synthase | SAMN04488036_10751 | Not Available | Negative | 1005797 - 1006630 | 31617.6 |
| lactoylglutathione lyase | SAMN04488036_10752 | Not Available | Positive | 1006870 - 1007298 | 16115.0 |
| protein of unknown function | SAMN04488036_10753 | Not Available | Positive | 1007265 - 1008020 | 26915.2 |
| transcriptional regulator, marr family | SAMN04488036_10754 | Not Available | Negative | 1008162 - 1008659 | 19190.0 |
| antitoxin cptb | SAMN04488036_10755 | Not Available | Negative | 1008749 - 1009015 | 10316.4 |
| helix-turn-helix | SAMN04488036_10756 | Not Available | Negative | 1009026 - 1009430 | 15109.1 |
| aspartate aminotransferase | SAMN04488036_10757 | Not Available | Positive | 1009515 - 1010720 | 43557.6 |
| hypothetical protein | SAMN04488036_10758 | Not Available | Positive | 1010740 - 1011144 | 15517.7 |
| (2r)-3-sulfolactate dehydrogenase (nadp+) | SAMN04488036_10759 | Not Available | Positive | 1011212 - 1012195 | 33973.5 |
| multidrug resistance protein, mate family | SAMN04488036_10760 | Not Available | Negative | 1012215 - 1013582 | 48944.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
