Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonyl-trna synthetase | SAMN04488036_10741 | Not Available | Positive | 998994 - 1000943 | 73641.2 |
| uncharacterized membrane protein | SAMN04488036_10742 | Not Available | Positive | 1001175 - 1001477 | 9876.63 |
| hypothetical protein | SAMN04488036_10743 | Not Available | Positive | 1001569 - 1002426 | 31543.9 |
| putative dna-binding domain-containing protein | SAMN04488036_10744 | Not Available | Positive | 1002423 - 1003175 | 26424.9 |
| putative oxidoreductase | SAMN04488036_10745 | Not Available | Positive | 1003203 - 1003721 | 18810.3 |
| hypothetical protein | SAMN04488036_10746 | Not Available | Negative | 1003710 - 1004078 | 12632.8 |
| arsenate reductase | SAMN04488036_10747 | Not Available | Negative | 1004125 - 1004529 | 15033.2 |
| cold-shock dna-binding protein family | SAMN04488036_10748 | Not Available | Positive | 1004649 - 1004855 | 7586.11 |
| hypothetical protein | SAMN04488036_10749 | Not Available | Negative | 1004898 - 1005197 | 10299.3 |
| dihydrofolate reductase | SAMN04488036_10750 | Not Available | Negative | 1005308 - 1005793 | 17960.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
