Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyhydroxyalkanoate synthesis repressor phar | SAMN04488036_10731 | Not Available | Negative | 990087 - 990629 | 20361.3 |
| phasin protein | SAMN04488036_10732 | Not Available | Negative | 990773 - 991222 | 15454.3 |
| polyhydroxyalkanoate synthase | SAMN04488036_10733 | Not Available | Negative | 991368 - 993128 | 66502.8 |
| poly(3-hydroxybutyrate) depolymerase | SAMN04488036_10734 | Not Available | Positive | 993273 - 994541 | 46839.0 |
| luciferase family oxidoreductase, group 1 | SAMN04488036_10735 | Not Available | Positive | 994663 - 995649 | 35693.8 |
| hypothetical protein | SAMN04488036_10736 | Not Available | Negative | 995642 - 995872 | 8556.85 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488036_10737 | Not Available | Negative | 995869 - 996579 | 25772.8 |
| hypothetical protein | SAMN04488036_10738 | Not Available | Negative | 996643 - 997086 | 15912.8 |
| esterase/lipase | SAMN04488036_10739 | Not Available | Negative | 997097 - 998077 | 35054.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488036_10740 | Not Available | Negative | 998074 - 998835 | 27894.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
