Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter, phosphonate, substrate-binding protein | SAMN04488036_10721 | Not Available | Positive | 979352 - 980086 | 27383.3 |
| amino acid abc transporter atp-binding protein, paat family | SAMN04488036_10722 | Not Available | Positive | 980225 - 981001 | 28520.1 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN04488036_10723 | Not Available | Positive | 981099 - 981821 | 25067.3 |
| amino acid abc transporter membrane protein 1, paat family | SAMN04488036_10724 | Not Available | Positive | 981930 - 982817 | 33183.9 |
| amino acid abc transporter membrane protein 2, paat family | SAMN04488036_10725 | Not Available | Positive | 982814 - 983623 | 30792.7 |
| glutamate--putrescine ligase | SAMN04488036_10726 | Not Available | Positive | 983965 - 985281 | 47928.1 |
| gmp synthase (glutamine-hydrolysing) | SAMN04488036_10727 | Not Available | Positive | 985331 - 986014 | 24823.8 |
| l-glutamine synthetase | SAMN04488036_10728 | Not Available | Positive | 986011 - 987369 | 50627.8 |
| gamma-glutamylputrescine oxidase | SAMN04488036_10729 | Not Available | Positive | 987412 - 988716 | 46770.7 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN04488036_10730 | Not Available | Positive | 988822 - 990039 | 44279.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
