Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10711 | Not Available | Positive | 973059 - 973454 | 14752.5 |
| nitrile hydratase accessory protein | SAMN04488036_10712 | Not Available | Negative | 973594 - 973914 | 11716.8 |
| nitrile hydratase | SAMN04488036_10713 | Not Available | Negative | 973911 - 974579 | 23711.8 |
| nitrile hydratase | SAMN04488036_10714 | Not Available | Negative | 974576 - 975190 | 22578.2 |
| protein translocase subunit secg | SAMN04488036_10715 | Not Available | Positive | 975341 - 975697 | 11746.2 |
| ctp synthase | SAMN04488036_10716 | Not Available | Positive | 975938 - 977581 | 60702.1 |
| hypothetical protein | SAMN04488036_10717 | Not Available | Positive | 977770 - 978036 | 9593.49 |
| uncharacterized conserved protein, duf1330 family | SAMN04488036_10718 | Not Available | Positive | 978082 - 978375 | 10991.7 |
| uncharacterized conserved protein, tellurite resistance protein b (terb) family | SAMN04488036_10719 | Not Available | Positive | 978372 - 978797 | 15727.8 |
| uncharacterized conserved protein, tellurite resistance protein b (terb) family | SAMN04488036_10720 | Not Available | Positive | 978915 - 979355 | 16196.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
