Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ompr family, sensor histidine kinase chvg | SAMN04488036_106219 | Not Available | Positive | 944829 - 946514 | 60387.1 |
| hpr kinase/phosphorylase | SAMN04488036_106220 | Not Available | Positive | 946524 - 946979 | 16052.5 |
| upf0042 nucleotide-binding protein | SAMN04488036_106221 | Not Available | Positive | 946976 - 947908 | 34058.7 |
| pts system, mannose-specific iia component | SAMN04488036_106222 | Not Available | Positive | 947905 - 948297 | 13554.4 |
| phosphocarrier protein | SAMN04488036_106223 | Not Available | Positive | 948301 - 948579 | 9280.04 |
| acyltransferase | SAMN04488036_106224 | Not Available | Positive | 948629 - 949522 | 33620.3 |
| 3-hydroxybutyryl-coa dehydrogenase | SAMN04488036_106225 | Not Available | Negative | 949588 - 950463 | 31860.6 |
| hypothetical protein | SAMN04488036_106226 | Not Available | Positive | 950639 - 951451 | 29866.1 |
| electron transfer flavoprotein alpha subunit apoprotein | SAMN04488036_106227 | Not Available | Negative | 951523 - 952452 | 31175.9 |
| electron transfer flavoprotein beta subunit | SAMN04488036_106228 | Not Available | Negative | 952452 - 953210 | 26850.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
