Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | SAMN04488036_106209 | Not Available | Positive | 935615 - 936709 | 40573.9 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | SAMN04488036_106210 | Not Available | Positive | 936706 - 937575 | 32069.1 |
| putative phosphonate transport system atp-binding protein | SAMN04488036_106211 | Not Available | Positive | 937572 - 938342 | 28269.2 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | SAMN04488036_106212 | Not Available | Positive | 938404 - 939093 | 24458.7 |
| ribose 1,5-bisphosphokinase | SAMN04488036_106213 | Not Available | Positive | 939093 - 939635 | 18646.2 |
| putative phosphonate metabolism protein | SAMN04488036_106214 | Not Available | Negative | 939617 - 940300 | 24497.4 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | SAMN04488036_106215 | Not Available | Positive | 940338 - 941498 | 41270.1 |
| putative acetyltransferase | SAMN04488036_106216 | Not Available | Negative | 941495 - 942100 | 21740.0 |
| phosphoenolpyruvate carboxykinase (atp) | SAMN04488036_106217 | Not Available | Negative | 942114 - 943712 | 58468.0 |
| two component transcriptional regulator, winged helix family | SAMN04488036_106218 | Not Available | Positive | 944085 - 944786 | 26794.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
