Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_106188 | Not Available | Negative | 911579 - 912802 | 44234.9 |
| abc-type multidrug transport system, atpase component | SAMN04488036_106189 | Not Available | Negative | 912780 - 914759 | 70627.7 |
| protein of unknown function | SAMN04488036_106190 | Not Available | Positive | 915003 - 916691 | 64275.9 |
| hypothetical protein | SAMN04488036_106191 | Not Available | Positive | 916691 - 918130 | 51763.3 |
| molybdate transport system substrate-binding protein | SAMN04488036_106192 | Not Available | Positive | 918264 - 919070 | 28471.3 |
| molybdate transport system permease protein | SAMN04488036_106193 | Not Available | Positive | 919067 - 919762 | 24360.6 |
| molybdate transport system atp-binding protein | SAMN04488036_106194 | Not Available | Positive | 919759 - 920844 | 38685.2 |
| uncharacterized protein | SAMN04488036_106195 | Not Available | Positive | 921095 - 923470 | 83706.1 |
| 3-dehydroquinate dehydratase | SAMN04488036_106196 | Not Available | Negative | 923510 - 923947 | 15688.9 |
| dna-binding transcriptional regulator, lrp family | SAMN04488036_106197 | Not Available | Negative | 924011 - 924451 | 16434.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
